Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1127 domain-containing protein | F126LOC_RS20675 | Not Available | Positive | 4702592 - 4702783 | 7765.49 |
| shikimate transporter | F126LOC_RS20680 | Not Available | Negative | 4702880 - 4704277 | 50265.6 |
| dna-directed rna polymerase subunit beta' | F126LOC_RS20685 | Not Available | Negative | 4704529 - 4708752 | 155282.0 |
| dna-directed rna polymerase subunit beta | F126LOC_RS20690 | Not Available | Negative | 4708859 - 4712887 | 150677.0 |
| 50s ribosomal protein l7/l12 | F126LOC_RS20695 | Not Available | Negative | 4713215 - 4713580 | 12353.9 |
| 50s ribosomal protein l10 | F126LOC_RS20700 | Not Available | Negative | 4713647 - 4714144 | 17781.7 |
| 50s ribosomal protein l1 | F126LOC_RS20705 | Not Available | Negative | 4714463 - 4715167 | 24738.0 |
| 50s ribosomal protein l11 | F126LOC_RS20710 | Not Available | Negative | 4715171 - 4715599 | 14740.0 |
| transcription termination/antitermination protein nusg | F126LOC_RS20715 | Not Available | Negative | 4715762 - 4716307 | 20558.7 |
| preprotein translocase subunit sece | F126LOC_RS20720 | Not Available | Negative | 4716309 - 4716692 | 13724.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
