Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen decarboxylase | F126LOC_RS20625 | Not Available | Negative | 4692271 - 4693335 | 39019.1 |
| nad(+) diphosphatase | F126LOC_RS20630 | Not Available | Negative | 4693483 - 4694265 | 29773.7 |
| rsd/algq family anti-sigma factor | F126LOC_RS20635 | Not Available | Positive | 4694374 - 4694835 | 17596.8 |
| phosphomethylpyrimidine synthase thic | F126LOC_RS20640 | Not Available | Positive | 4695227 - 4697182 | 72788.5 |
| thiamine phosphate synthase | F126LOC_RS20645 | Not Available | Positive | 4697179 - 4697820 | 23259.0 |
| hesa/moeb/thif family protein | F126LOC_RS20650 | Not Available | Positive | 4697822 - 4698601 | 27211.9 |
| sulfur carrier protein this | F126LOC_RS20655 | Not Available | Positive | 4698598 - 4698798 | 7299.67 |
| thiazole synthase | F126LOC_RS20660 | Not Available | Positive | 4698800 - 4699582 | 27296.4 |
| 2-iminoacetate synthase thih | F126LOC_RS20665 | Not Available | Positive | 4699582 - 4700703 | 42602.9 |
| plp-dependent aminotransferase family protein | F126LOC_RS20670 | Not Available | Negative | 4700983 - 4702419 | 53808.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
