Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abi family protein | F126LOC_RS20525 | Not Available | Positive | 4671639 - 4672274 | 24719.8 |
| asch domain-containing protein | F126LOC_RS20530 | Not Available | Negative | 4672582 - 4672983 | 14943.6 |
| endonuclease/exonuclease/phosphatase family protein | F126LOC_RS20535 | Not Available | Negative | 4673052 - 4674197 | 43493.6 |
| amino acid abc transporter substrate-binding protein | F126LOC_RS20540 | Not Available | Positive | 4674518 - 4675285 | 27668.8 |
| amino acid abc transporter permease | F126LOC_RS20545 | Not Available | Positive | 4675375 - 4676040 | 24519.7 |
| amino acid abc transporter substrate-binding protein | F126LOC_RS20550 | Not Available | Positive | 4676402 - 4677427 | 37003.1 |
| amino acid abc transporter permease | F126LOC_RS20555 | Not Available | Positive | 4677495 - 4678673 | 43269.7 |
| amino acid abc transporter permease | F126LOC_RS20560 | Not Available | Positive | 4678683 - 4679777 | 40971.0 |
| amino acid abc transporter atp-binding protein | F126LOC_RS20565 | Not Available | Positive | 4679786 - 4680547 | 28642.8 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4680993 - 4681108 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
