Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yhdt family protein | F126LOC_RS20475 | Not Available | Positive | 4664497 - 4664739 | 9254.37 |
| sodium/pantothenate symporter | F126LOC_RS20480 | Not Available | Positive | 4664729 - 4666180 | 51734.5 |
| 50s ribosomal protein l11 methyltransferase | F126LOC_RS20485 | Not Available | Positive | 4666198 - 4667085 | 32140.3 |
| carbonic anhydrase | F126LOC_RS20490 | Not Available | Positive | 4667261 - 4667995 | 26821.7 |
| trna dihydrouridine synthase dusb | F126LOC_RS20495 | Not Available | Positive | 4668353 - 4669318 | 35548.0 |
| dna-binding transcriptional regulator fis | F126LOC_RS20500 | Not Available | Positive | 4669342 - 4669638 | 11169.6 |
| hypothetical protein | F126LOC_RS20505 | Not Available | Negative | 4669776 - 4669967 | 7186.4 |
| host cell division inhibitor icd-like protein | F126LOC_RS20510 | Not Available | Negative | 4669960 - 4670148 | 7024.35 |
| ylci/ynfo family protein | F126LOC_RS20515 | Not Available | Positive | 4670337 - 4670516 | 6641.97 |
| helix-turn-helix domain-containing protein | F126LOC_RS20520 | Not Available | Positive | 4671017 - 4671505 | 18167.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
