Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase e specificity factor csrd | F126LOC_RS20425 | Not Available | Negative | 4653008 - 4654945 | 72706.6 |
| mdr family oxidoreductase | F126LOC_RS20430 | Not Available | Positive | 4655123 - 4656100 | 34423.4 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | F126LOC_RS20435 | Not Available | Positive | 4656271 - 4657272 | 37476.9 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | F126LOC_RS20440 | Not Available | Positive | 4657352 - 4657951 | 23101.6 |
| type ii 3-dehydroquinate dehydratase | F126LOC_RS20445 | Not Available | Positive | 4658193 - 4658645 | 16438.6 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | F126LOC_RS20450 | Not Available | Positive | 4658670 - 4659137 | 16543.2 |
| acetyl-coa carboxylase biotin carboxylase subunit | F126LOC_RS20455 | Not Available | Positive | 4659149 - 4660492 | 49371.7 |
| arac family transcriptional regulator | F126LOC_RS20460 | Not Available | Positive | 4660640 - 4661401 | 28659.8 |
| 2-isopropylmalate synthase | F126LOC_RS20465 | Not Available | Negative | 4661391 - 4663061 | 62286.4 |
| tobe domain-containing protein | F126LOC_RS20470 | Not Available | Negative | 4663550 - 4663978 | 14649.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
