Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | F126LOC_RS01175 | Not Available | Positive | 264898 - 265569 | 24761.3 |
| amino acid abc transporter atp-binding protein | F126LOC_RS01180 | Not Available | Positive | 265579 - 266340 | 28018.9 |
| m20 peptidase aminoacylase family protein | F126LOC_RS01185 | Not Available | Positive | 266418 - 267575 | 41717.7 |
| protoheme ix biogenesis protein hemy | F126LOC_RS01190 | Not Available | Negative | 268258 - 269451 | 45326.1 |
| uroporphyrinogen-iii c-methyltransferase | F126LOC_RS01195 | Not Available | Negative | 269454 - 270578 | 41540.6 |
| uroporphyrinogen-iii synthase | F126LOC_RS01200 | Not Available | Negative | 270602 - 271342 | 27696.3 |
| hydroxymethylbilane synthase | F126LOC_RS01205 | Not Available | Negative | 271339 - 272280 | 33864.9 |
| class i adenylate cyclase | F126LOC_RS01210 | Not Available | Positive | 272736 - 275294 | 97682.7 |
| mfs transporter | F126LOC_RS01215 | Not Available | Positive | 275340 - 276512 | 41584.5 |
| iron donor protein cyay | F126LOC_RS01220 | Not Available | Negative | 276547 - 276867 | 11983.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
