Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase adapter rapz | F126LOC_RS20325 | Not Available | Positive | 4631266 - 4632123 | 32574.2 |
| pts phosphocarrier protein npr | F126LOC_RS20330 | Not Available | Positive | 4632155 - 4632427 | 9768.71 |
| nucleoside diphosphate kinase regulator | F126LOC_RS20335 | Not Available | Positive | 4632599 - 4633009 | 15135.0 |
| metalloprotease pmba | F126LOC_RS20340 | Not Available | Negative | 4633110 - 4634450 | 48022.9 |
| ribosome biogenesis factor yjga | F126LOC_RS20345 | Not Available | Positive | 4634746 - 4635297 | 21338.3 |
| nad-dependent succinate-semialdehyde dehydrogenase | F126LOC_RS20350 | Not Available | Negative | 4635406 - 4636860 | 52033.2 |
| p-hydroxybenzoic acid efflux pump subunit aaeb | F126LOC_RS20355 | Not Available | Negative | 4637000 - 4638988 | 73031.6 |
| p-hydroxybenzoic acid efflux pump subunit aaea | F126LOC_RS20360 | Not Available | Negative | 4639000 - 4639965 | 35600.8 |
| p-hydroxybenzoic acid efflux pump operon protein aaex | F126LOC_RS20365 | Not Available | Negative | 4639973 - 4640176 | 7756.87 |
| hth-type transcriptional activator aaer | F126LOC_RS20370 | Not Available | Positive | 4640511 - 4641446 | 35063.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
