Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid abc transporter atp-binding protein mlaf | F126LOC_RS20275 | Not Available | Negative | 4623114 - 4623926 | 29400.8 |
| calcium/sodium antiporter | F126LOC_RS20280 | Not Available | Positive | 4624216 - 4625181 | 34150.0 |
| arabinose-5-phosphate isomerase kdsd | F126LOC_RS20285 | Not Available | Positive | 4625235 - 4626308 | 38474.6 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | F126LOC_RS20290 | Not Available | Positive | 4626328 - 4626894 | 20607.9 |
| lps export abc transporter periplasmic protein lptc | F126LOC_RS20295 | Not Available | Positive | 4626891 - 4627457 | 21031.9 |
| lipopolysaccharide abc transporter substrate-binding protein lpta | F126LOC_RS20300 | Not Available | Positive | 4627438 - 4628010 | 20918.8 |
| lps export abc transporter atp-binding protein | F126LOC_RS20305 | Not Available | Positive | 4628014 - 4628739 | 26711.2 |
| rna polymerase factor sigma-54 | F126LOC_RS20310 | Not Available | Positive | 4628789 - 4630222 | 53523.2 |
| ribosome hibernation promoting factor | F126LOC_RS20315 | Not Available | Positive | 4630246 - 4630533 | 10871.1 |
| pts iia-like nitrogen regulatory protein ptsn | F126LOC_RS20320 | Not Available | Positive | 4630629 - 4631102 | 17209.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
