Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aerobic respiration two-component sensor histidine kinase arcb | F126LOC_RS20175 | Not Available | Negative | 4600098 - 4602467 | 89318.8 |
| tigr01212 family radical sam protein | F126LOC_RS20180 | Not Available | Negative | 4602593 - 4603522 | 34863.9 |
| glutamate synthase large subunit | F126LOC_RS20185 | Not Available | Positive | 4604174 - 4608634 | 163508.0 |
| glutamate synthase small subunit | F126LOC_RS20190 | Not Available | Positive | 4608644 - 4610062 | 51867.2 |
| gfa family protein | F126LOC_RS20195 | Not Available | Negative | 4610110 - 4610538 | 15746.6 |
| (s)-acetoin forming diacetyl reductase | F126LOC_RS20200 | Not Available | Positive | 4610929 - 4611702 | 27017.1 |
| clpxp protease specificity-enhancing factor | F126LOC_RS20205 | Not Available | Negative | 4611761 - 4612264 | 18058.3 |
| stringent starvation protein sspa | F126LOC_RS20210 | Not Available | Negative | 4612270 - 4612911 | 24295.4 |
| 30s ribosomal protein s9 | F126LOC_RS20215 | Not Available | Negative | 4613246 - 4613638 | 14805.0 |
| 50s ribosomal protein l13 | F126LOC_RS20220 | Not Available | Negative | 4613654 - 4614082 | 16033.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
