Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system phd/yefm family antitoxin | F126LOC_RS20125 | Not Available | Negative | 4591092 - 4591346 | 9208.88 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 4591767 - 4592145 | Not Available |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | F126LOC_RS20135 | Not Available | Negative | 4592171 - 4593058 | 32311.6 |
| penicillin-binding protein activator | F126LOC_RS20140 | Not Available | Positive | 4593120 - 4595138 | 72290.1 |
| yran family protein | F126LOC_RS20145 | Not Available | Positive | 4595096 - 4595491 | 14527.2 |
| dnaa initiator-associating protein diaa | F126LOC_RS20150 | Not Available | Positive | 4595555 - 4596145 | 21038.3 |
| division/outer membrane stress-associated lipid-binding lipoprotein | F126LOC_RS20155 | Not Available | Positive | 4596157 - 4596729 | 19833.8 |
| alginate lyase family protein | F126LOC_RS20160 | Not Available | Negative | 4596855 - 4598150 | 48723.9 |
| monofunctional biosynthetic peptidoglycan transglycosylase | F126LOC_RS20165 | Not Available | Negative | 4598223 - 4598957 | 27644.7 |
| isoprenoid biosynthesis glyoxalase elbb | F126LOC_RS20170 | Not Available | Negative | 4598954 - 4599607 | 22822.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
