Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit b | F126LOC_RS20075 | Not Available | Negative | 4581356 - 4583251 | 70133.0 |
| esterase yqia | F126LOC_RS20080 | Not Available | Negative | 4583335 - 4583916 | 21659.0 |
| 3',5'-cyclic-amp phosphodiesterase | F126LOC_RS20085 | Not Available | Negative | 4583916 - 4584743 | 31003.8 |
| duf1249 family protein | F126LOC_RS20090 | Not Available | Negative | 4584851 - 4585282 | 16924.6 |
| adp-ribose diphosphatase | F126LOC_RS20095 | Not Available | Negative | 4585287 - 4585919 | 23736.9 |
| outer membrane channel protein tolc | F126LOC_RS20100 | Not Available | Positive | 4586256 - 4587647 | 50564.0 |
| duf1190 family protein | F126LOC_RS20105 | Not Available | Positive | 4587918 - 4588592 | 23472.6 |
| glutathionylspermidine synthase family protein | F126LOC_RS20110 | Not Available | Positive | 4588604 - 4589764 | 44779.7 |
| 4,5-dopa dioxygenase extradiol | F126LOC_RS20115 | Not Available | Negative | 4589832 - 4590617 | 28796.2 |
| type ii toxin-antitoxin system rele family toxin | F126LOC_RS20120 | Not Available | Negative | 4590815 - 4591102 | 11012.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
