Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS19875 | Not Available | Positive | 4537640 - 4538896 | 43926.0 |
| pyridoxal phosphate-dependent decarboxylase family protein | F126LOC_RS19880 | Not Available | Positive | 4538951 - 4540303 | 48690.8 |
| hypothetical protein | F126LOC_RS19885 | Not Available | Negative | 4540379 - 4540837 | 16159.7 |
| type ii toxin-antitoxin system rele family toxin | F126LOC_RS19890 | Not Available | Positive | 4541145 - 4541405 | 10177.5 |
| helix-turn-helix domain-containing protein | F126LOC_RS19895 | Not Available | Positive | 4541480 - 4541851 | 13946.4 |
| bactofilin family protein | F126LOC_RS19900 | Not Available | Negative | 4541928 - 4542479 | 19690.2 |
| aminoimidazole riboside kinase | F126LOC_RS19905 | Not Available | Positive | 4542950 - 4543873 | 33872.3 |
| carbohydrate porin | F126LOC_RS19910 | Not Available | Positive | 4544072 - 4545607 | 56469.2 |
| sucrose-specific pts transporter subunit iibc | F126LOC_RS19915 | Not Available | Positive | 4545688 - 4547058 | 47784.7 |
| sucrose-6-phosphate hydrolase | F126LOC_RS19920 | Not Available | Positive | 4547058 - 4548467 | 53430.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
