Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asn; | Not Available | Not Available | Positive | 2954542 - 2954617 | Not Available |
| Prophage p4 integrase | F126LOC_RS13035 | Not Available | Positive | 2954779 - 2956050 | 48545.8 |
| Hypothetical protein | F126LOC_RS13040 | Not Available | Negative | 2956184 - 2956498 | 11508.8 |
| Hypothetical protein | F126LOC_RS13045 | Not Available | Negative | 2956684 - 2956998 | 11545.8 |
| Ner | F126LOC_RS13050 | Not Available | Positive | 2957145 - 2957417 | 10274.2 |
| hypothetical protein | F126LOC_RS13055 | Not Available | Positive | 2957832 - 2958749 | 35210.8 |
| Gp52 | F126LOC_RS13060 | Not Available | Positive | 2958903 - 2959097 | 7438.11 |
| duf2857 domain-containing protein | F126LOC_RS13065 | Not Available | Positive | 2959114 - 2959698 | 22008.4 |
| Tail tube protein | F126LOC_RS13070 | Not Available | Positive | 2959688 - 2959897 | 8261.8 |
| atp-binding protein | F126LOC_RS13075 | Not Available | Negative | 2960042 - 2961724 | 63164.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
