Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine carbamoyltransferase | F126LOC_RS19825 | Not Available | Positive | 4528856 - 4529863 | 36965.3 |
| yhch/yjgk/yial family protein | F126LOC_RS19830 | Not Available | Negative | 4529911 - 4530378 | 17167.7 |
| aspartate carbamoyltransferase | F126LOC_RS19835 | Not Available | Positive | 4530828 - 4531763 | 34657.7 |
| aspartate carbamoyltransferase regulatory subunit | F126LOC_RS19840 | Not Available | Positive | 4531779 - 4532243 | 17368.9 |
| 2-iminobutanoate/2-iminopropanoate deaminase | F126LOC_RS19845 | Not Available | Positive | 4532342 - 4532728 | 13873.8 |
| anaerobic ribonucleoside-triphosphate reductase | F126LOC_RS19850 | Not Available | Positive | 4533129 - 4535267 | 79858.9 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | F126LOC_RS19855 | Not Available | Positive | 4535349 - 4535813 | 17399.8 |
| hypothetical protein | F126LOC_RS19860 | Not Available | Negative | 4535825 - 4536478 | 23531.5 |
| yhbp family protein | F126LOC_RS19865 | Not Available | Negative | 4536584 - 4537030 | 16980.5 |
| winged helix-turn-helix transcriptional regulator | F126LOC_RS19870 | Not Available | Negative | 4537040 - 4537486 | 16652.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
