Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucyl aminopeptidase | F126LOC_RS19775 | Not Available | Positive | 4515891 - 4517402 | 55032.3 |
| dna polymerase iii subunit chi | F126LOC_RS19780 | Not Available | Positive | 4517530 - 4517979 | 16867.9 |
| valine--trna ligase | F126LOC_RS19785 | Not Available | Positive | 4517992 - 4520847 | 107951.0 |
| rna 2'-phosphotransferase | F126LOC_RS19790 | Not Available | Positive | 4520985 - 4521545 | 20478.3 |
| methyl-accepting chemotaxis protein | F126LOC_RS19795 | Not Available | Negative | 4521623 - 4523242 | 58035.7 |
| alpha/beta fold hydrolase | F126LOC_RS19800 | Not Available | Negative | 4523453 - 4524532 | 39955.1 |
| m48 family metallopeptidase | F126LOC_RS19805 | Not Available | Negative | 4525007 - 4526044 | 38718.7 |
| yjgn family protein | F126LOC_RS19810 | Not Available | Negative | 4526054 - 4527232 | 43430.3 |
| gnat family n-acetyltransferase | F126LOC_RS19815 | Not Available | Positive | 4527656 - 4528159 | 18211.9 |
| ribonuclease e inhibitor rrab | F126LOC_RS19820 | Not Available | Negative | 4528269 - 4528694 | 16033.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
