Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna repair transcriptional activator rtcr | F126LOC_RS19575 | Not Available | Positive | 4464964 - 4466550 | 60188.7 |
| hypothetical protein | F126LOC_RS19580 | Not Available | Positive | 4466713 - 4466982 | 9913.9 |
| hypothetical protein | F126LOC_RS19585 | Not Available | Positive | 4466996 - 4467340 | 13209.7 |
| hypothetical protein | F126LOC_RS19590 | Not Available | Positive | 4467824 - 4468138 | 11112.2 |
| lysr family transcriptional regulator | F126LOC_RS19595 | Not Available | Positive | 4468752 - 4469747 | 37076.1 |
| aspartate ammonia-lyase | F126LOC_RS19600 | Not Available | Positive | 4469984 - 4471423 | 52739.6 |
| tolc family protein | F126LOC_RS19605 | Not Available | Positive | 4471820 - 4473241 | 52782.1 |
| hlyd family secretion protein | F126LOC_RS19610 | Not Available | Positive | 4473238 - 4474236 | 37161.6 |
| abc transporter permease | F126LOC_RS19615 | Not Available | Positive | 4474236 - 4475351 | 40497.7 |
| abc transporter permease | F126LOC_RS19620 | Not Available | Positive | 4475345 - 4476538 | 44184.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
