Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis protein | F126LOC_RS19525 | Not Available | Positive | 4453951 - 4455900 | 70435.5 |
| carbonic anhydrase | F126LOC_RS19530 | Not Available | Positive | 4456498 - 4457133 | 23505.9 |
| sulp family inorganic anion transporter | F126LOC_RS19535 | Not Available | Positive | 4457130 - 4458599 | 52356.1 |
| duf1615 domain-containing protein | F126LOC_RS19540 | Not Available | Negative | 4458648 - 4459745 | 40391.4 |
| hnh endonuclease | F126LOC_RS19545 | Not Available | Positive | 4459898 - 4460689 | 29447.1 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS19550 | Not Available | Negative | 4460695 - 4461000 | 11657.3 |
| damage-inducible protein j | F126LOC_RS19555 | Not Available | Negative | 4460997 - 4461281 | 10874.5 |
| heat repeat domain-containing protein | F126LOC_RS19560 | Not Available | Negative | 4461361 - 4462704 | 51077.4 |
| nucleotidyltransferase domain-containing protein | F126LOC_RS19565 | Not Available | Negative | 4462742 - 4463533 | 30864.1 |
| rtcb family protein | F126LOC_RS19570 | Not Available | Negative | 4463538 - 4464764 | 45017.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
