Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS19475 | Not Available | Negative | 4441558 - 4441863 | 11603.1 |
| copg family ribbon-helix-helix protein | F126LOC_RS19480 | Not Available | Negative | 4441851 - 4442141 | 11100.7 |
| helix-turn-helix domain-containing protein | F126LOC_RS19485 | Not Available | Negative | 4442203 - 4443057 | 32735.2 |
| hth-type transcriptional activator rhas | F126LOC_RS19490 | Not Available | Negative | 4443082 - 4443921 | 31820.4 |
| rhamnulokinase | F126LOC_RS19495 | Not Available | Positive | 4444258 - 4445748 | 54746.2 |
| l-rhamnose isomerase | F126LOC_RS19500 | Not Available | Positive | 4445745 - 4447007 | 47283.1 |
| rhamnulose-1-phosphate aldolase | F126LOC_RS19505 | Not Available | Positive | 4447012 - 4447836 | 30175.3 |
| l-rhamnose mutarotase | F126LOC_RS19510 | Not Available | Positive | 4447942 - 4448256 | 12299.5 |
| methyl-accepting chemotaxis protein | F126LOC_RS19515 | Not Available | Positive | 4448707 - 4450284 | 56867.8 |
| magnesium-translocating p-type atpase | F126LOC_RS19520 | Not Available | Positive | 4450800 - 4453511 | 99448.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
