Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent oxidoreductase | F126LOC_RS19425 | Not Available | Negative | 4430698 - 4431735 | 37403.0 |
| tigr00645 family protein | F126LOC_RS19430 | Not Available | Negative | 4431830 - 4432336 | 18928.8 |
| l-rhamnose/proton symporter rhat | F126LOC_RS19435 | Not Available | Positive | 4432662 - 4433696 | 37501.4 |
| duf4265 domain-containing protein | F126LOC_RS19440 | Not Available | Positive | 4434036 - 4434458 | 15978.8 |
| hypothetical protein | F126LOC_RS19445 | Not Available | Positive | 4434540 - 4434887 | 13076.3 |
| yagu family protein | F126LOC_RS19450 | Not Available | Negative | 4435116 - 4435730 | 23023.1 |
| abc transporter substrate-binding protein | F126LOC_RS19455 | Not Available | Positive | 4436383 - 4437996 | 58762.5 |
| abc transporter permease | F126LOC_RS19460 | Not Available | Positive | 4437974 - 4438933 | 34447.0 |
| abc transporter permease | F126LOC_RS19465 | Not Available | Positive | 4438926 - 4439792 | 30765.4 |
| dipeptide abc transporter atp-binding protein | F126LOC_RS19470 | Not Available | Positive | 4439789 - 4441498 | 61453.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
