Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylglucosamine--undecaprenyl-phosphate n-acetylglucosaminephosphotransferase | F126LOC_RS01075 | Not Available | Positive | 245673 - 246770 | 40999.7 |
| eca polysaccharide chain length modulation protein | F126LOC_RS01080 | Not Available | Positive | 246792 - 247838 | 39301.8 |
| non-hydrolyzing udp-n-acetylglucosamine 2-epimerase | F126LOC_RS01085 | Not Available | Positive | 247906 - 249036 | 42037.5 |
| udp-n-acetyl-d-mannosamine dehydrogenase | F126LOC_RS01090 | Not Available | Positive | 249322 - 250584 | 45564.1 |
| dtdp-glucose 4,6-dehydratase | F126LOC_RS01095 | Not Available | Positive | 250575 - 251648 | 40011.2 |
| dtdp-4-amino-4,6-dideoxy-d-galactose acyltransferase | F126LOC_RS01100 | Not Available | Positive | 251686 - 252417 | 26957.2 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | F126LOC_RS01105 | Not Available | Positive | 252422 - 253552 | 42086.6 |
| lipid iii flippase wzxe | F126LOC_RS01110 | Not Available | Positive | 253554 - 254804 | 45182.6 |
| tdp-n-acetylfucosamine:lipid ii n-acetylfucosaminyltransferase | F126LOC_RS01115 | Not Available | Positive | 254801 - 255886 | 41142.6 |
| eca oligosaccharide polymerase | F126LOC_RS01120 | Not Available | Positive | 255883 - 257271 | 52737.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
