Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isochorismatase | F126LOC_RS19275 | Not Available | Negative | 4401488 - 4402363 | 32579.0 |
| (2,3-dihydroxybenzoyl)adenylate synthase | F126LOC_RS19280 | Not Available | Negative | 4402374 - 4403999 | 59852.6 |
| isochorismate synthase menf | F126LOC_RS19285 | Not Available | Negative | 4403996 - 4405192 | 43030.4 |
| mfs transporter | F126LOC_RS19290 | Not Available | Positive | 4405536 - 4406783 | 44387.6 |
| tonb-dependent receptor domain-containing protein | F126LOC_RS19295 | Not Available | Positive | 4407006 - 4408952 | 72256.6 |
| 4'-phosphopantetheinyl transferase family protein | F126LOC_RS19300 | Not Available | Negative | 4409006 - 4409722 | 26986.9 |
| nupc/nupg family nucleoside cnt transporter | F126LOC_RS19305 | Not Available | Negative | 4409872 - 4411149 | 44524.6 |
| tatd family hydrolase | F126LOC_RS19310 | Not Available | Negative | 4411452 - 4412249 | 30260.5 |
| csbd family protein | F126LOC_RS19315 | Not Available | Negative | 4412364 - 4412552 | 7079.12 |
| duf1328 domain-containing protein | F126LOC_RS19320 | Not Available | Negative | 4412704 - 4412865 | 5506.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
