Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS19125 | Not Available | Positive | 4365052 - 4365393 | 12317.3 |
| hypothetical protein | F126LOC_RS19130 | Not Available | Negative | 4365847 - 4366197 | 12720.5 |
| mobc family replication-relaxation protein | F126LOC_RS19135 | Not Available | Positive | 4366290 - 4367033 | 29153.6 |
| type ii toxin-antitoxin system antitoxin ccda | F126LOC_RS19140 | Not Available | Positive | 4367092 - 4367310 | 8178.56 |
| type ii toxin-antitoxin system toxin ccdb | F126LOC_RS19145 | Not Available | Positive | 4367313 - 4367618 | 11760.3 |
| dna adenine methylase | F126LOC_RS19150 | Not Available | Negative | 4367818 - 4368660 | 32201.6 |
| atp-dependent nuclease | F126LOC_RS19155 | Not Available | Negative | 4368746 - 4370467 | 64951.0 |
| gnat family n-acetyltransferase | F126LOC_RS19160 | Not Available | Negative | 4370893 - 4371387 | 17690.6 |
| duf1778 domain-containing protein | F126LOC_RS19165 | Not Available | Negative | 4371384 - 4371677 | 10857.0 |
| helix-turn-helix domain-containing protein | F126LOC_RS19170 | Not Available | Negative | 4372017 - 4372259 | 8642.19 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
