Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate ammonia-lyase | F126LOC_RS19075 | Not Available | Positive | 4355775 - 4357214 | 52629.5 |
| anaerobic c4-dicarboxylate transporter | F126LOC_RS19080 | Not Available | Positive | 4357336 - 4358637 | 45444.4 |
| divalent cation tolerance protein cuta | F126LOC_RS19085 | Not Available | Positive | 4358769 - 4359101 | 12213.6 |
| protein-disulfide reductase dsbd | F126LOC_RS19090 | Not Available | Positive | 4359077 - 4360807 | 62936.0 |
| transcriptional regulator | F126LOC_RS19095 | Not Available | Positive | 4360842 - 4361417 | 22067.5 |
| lyse family translocator | F126LOC_RS19100 | Not Available | Negative | 4361414 - 4362004 | 21281.8 |
| arac family transcriptional regulator | F126LOC_RS19105 | Not Available | Negative | 4362040 - 4362885 | 32185.8 |
| Trna-phe | Not Available | Not Available | Positive | 4363057 - 4363132 | Not Available |
| tyrosine-type recombinase/integrase | F126LOC_RS19115 | Not Available | Positive | 4363294 - 4364556 | 47805.6 |
| ylci/ynfo family protein | F126LOC_RS19120 | Not Available | Negative | 4364672 - 4364866 | 7076.37 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
