Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc uptake transcriptional repressor zur | F126LOC_RS19025 | Not Available | Positive | 4345785 - 4346294 | 19029.6 |
| csbd family protein | F126LOC_RS19030 | Not Available | Negative | 4346352 - 4346561 | 8285.62 |
| transcriptional repressor lexa | F126LOC_RS19035 | Not Available | Negative | 4347011 - 4347619 | 22300.0 |
| diacylglycerol kinase | F126LOC_RS19040 | Not Available | Negative | 4347730 - 4348095 | 13138.5 |
| glycerol-3-phosphate 1-o-acyltransferase plsb | F126LOC_RS19045 | Not Available | Positive | 4348222 - 4350717 | 94141.4 |
| 4-hydroxybenzoate octaprenyltransferase | F126LOC_RS19050 | Not Available | Negative | 4350856 - 4351719 | 31629.5 |
| chorismate lyase | F126LOC_RS19055 | Not Available | Negative | 4351754 - 4352263 | 19486.3 |
| chaperonin groel | F126LOC_RS19060 | Not Available | Negative | 4352527 - 4354173 | 57066.0 |
| co-chaperone groes | F126LOC_RS19065 | Not Available | Negative | 4354219 - 4354512 | 10366.6 |
| fxsa family protein | F126LOC_RS19070 | Not Available | Negative | 4354766 - 4355248 | 17364.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
