Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor grea | F126LOC_RS18595 | Not Available | Negative | 4260480 - 4260956 | 17788.1 |
| serine-type d-ala-d-ala carboxypeptidase | F126LOC_RS18600 | Not Available | Positive | 4261225 - 4262658 | 51931.3 |
| obg family gtpase cgta | F126LOC_RS18605 | Not Available | Negative | 4262728 - 4263900 | 43002.8 |
| dmt family transporter | F126LOC_RS18610 | Not Available | Negative | 4264160 - 4265122 | 35224.7 |
| 50s ribosomal protein l27 | F126LOC_RS18615 | Not Available | Negative | 4265211 - 4265468 | 9124.0 |
| 50s ribosomal protein l21 | F126LOC_RS18620 | Not Available | Negative | 4265488 - 4265799 | 11550.0 |
| octaprenyl diphosphate synthase | F126LOC_RS18625 | Not Available | Positive | 4266056 - 4267027 | 35296.1 |
| dna-binding protein | F126LOC_RS18630 | Not Available | Negative | 4267106 - 4267480 | 14281.0 |
| acyltransferase family protein | F126LOC_RS18865 | Not Available | Negative | 4306718 - 4308709 | 75249.9 |
| lysr family transcriptional regulator | F126LOC_RS18870 | Not Available | Negative | 4309118 - 4310020 | 33256.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
