Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyribonucleotide nucleotidyltransferase | F126LOC_RS18485 | Not Available | Negative | 4241132 - 4243252 | 76421.7 |
| 30s ribosomal protein s15 | F126LOC_RS18490 | Not Available | Negative | 4243502 - 4243771 | 10197.4 |
| trna pseudouridine(55) synthase trub | F126LOC_RS18495 | Not Available | Negative | 4243894 - 4244838 | 35019.1 |
| 30s ribosome-binding factor rbfa | F126LOC_RS18500 | Not Available | Negative | 4244838 - 4245236 | 14853.9 |
| translation initiation factor if-2 | F126LOC_RS18505 | Not Available | Negative | 4245311 - 4248010 | 98670.1 |
| transcription termination factor nusa | F126LOC_RS18510 | Not Available | Negative | 4248036 - 4249565 | 56415.7 |
| ribosome maturation factor rimp | F126LOC_RS18515 | Not Available | Negative | 4249587 - 4250039 | 16604.0 |
| Trna-met | Not Available | Not Available | Positive | 4250258 - 4250334 | Not Available |
| response regulator transcription factor | F126LOC_RS22415 | Not Available | Negative | 4250645 - 4250806 | 5978.27 |
| response regulator transcription factor | F126LOC_RS18525 | Not Available | Negative | 4250839 - 4251258 | 15485.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
