Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system protein gcvh | F126LOC_RS18280 | Not Available | Negative | 4202063 - 4202455 | 14135.1 |
| glycine cleavage system aminomethyltransferase gcvt | F126LOC_RS18285 | Not Available | Negative | 4202632 - 4203747 | 40700.0 |
| lactaldehyde reductase | F126LOC_RS18290 | Not Available | Positive | 4204310 - 4205461 | 41060.5 |
| alpha/beta hydrolase | F126LOC_RS18295 | Not Available | Negative | 4205505 - 4206968 | 54183.9 |
| acetolactate synthase alss | F126LOC_RS18300 | Not Available | Negative | 4207103 - 4208782 | 60559.9 |
| acetolactate decarboxylase | F126LOC_RS18305 | Not Available | Negative | 4208804 - 4209586 | 29300.3 |
| lysr family transcriptional regulator | F126LOC_RS18310 | Not Available | Positive | 4209716 - 4210618 | 33537.8 |
| duf1435 domain-containing protein | F126LOC_RS18315 | Not Available | Positive | 4210725 - 4211015 | 10324.4 |
| Trna-leu | Not Available | Not Available | Positive | 4211151 - 4211237 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 4211300 - 4211386 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
