Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage antirepressor kilac domain-containing protein | F126LOC_RS18125 | Not Available | Negative | 4168146 - 4168871 | 27447.7 |
| site-specific integrase | F126LOC_RS18135 | Not Available | Negative | 4170280 - 4171971 | 63352.5 |
| Trna-gly | Not Available | Not Available | Positive | 4172084 - 4172157 | Not Available |
| lyse family translocator | F126LOC_RS18145 | Not Available | Negative | 4172239 - 4172922 | 24773.7 |
| arac family transcriptional regulator | F126LOC_RS18150 | Not Available | Negative | 4172985 - 4173740 | 28660.9 |
| lysine--trna ligase | F126LOC_RS18155 | Not Available | Negative | 4174016 - 4175533 | 57580.5 |
| peptide chain release factor 2 | F126LOC_RS18160 | Not Available | Negative | 4175542 - 4176640 | 41218.0 |
| single-stranded-dna-specific exonuclease recj | F126LOC_RS18165 | Not Available | Negative | 4176755 - 4178515 | 64983.9 |
| bifunctional protein-disulfide isomerase/oxidoreductase dsbc | F126LOC_RS18170 | Not Available | Negative | 4178522 - 4179238 | 25719.5 |
| site-specific tyrosine recombinase xerd | F126LOC_RS18175 | Not Available | Negative | 4179399 - 4180298 | 34423.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
