Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf413 domain-containing protein | F126LOC_RS00975 | Not Available | Positive | 218979 - 219317 | 13236.4 |
| yifb family mg chelatase-like aaa atpase | F126LOC_RS00980 | Not Available | Negative | 219375 - 220901 | 55501.6 |
| ilv operon leader peptide | F126LOC_RS00985 | Not Available | Positive | 221309 - 221407 | 3291.44 |
| acetolactate synthase 2 catalytic subunit | F126LOC_RS00990 | Not Available | Positive | 221548 - 223194 | 58820.7 |
| acetolactate synthase 2 small subunit | F126LOC_RS00995 | Not Available | Positive | 223252 - 223512 | 9752.92 |
| branched-chain amino acid transaminase | F126LOC_RS01000 | Not Available | Positive | 223538 - 224464 | 33834.3 |
| dihydroxy-acid dehydratase | F126LOC_RS01005 | Not Available | Positive | 224538 - 226388 | 65594.3 |
| threonine ammonia-lyase, biosynthetic | F126LOC_RS01010 | Not Available | Positive | 226394 - 227938 | 56051.4 |
| duf2461 domain-containing protein | F126LOC_RS01015 | Not Available | Positive | 228044 - 228787 | 29154.3 |
| lysozyme inhibitor lpri family protein | F126LOC_RS01020 | Not Available | Negative | 228800 - 229600 | 30063.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
