Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate/glutamate racemase family protein | F126LOC_RS18075 | Not Available | Negative | 4156794 - 4157483 | 23801.0 |
| gntr family transcriptional regulator | F126LOC_RS18080 | Not Available | Negative | 4157528 - 4158250 | 26863.2 |
| ncs1 family nucleobase:cation symporter-1 | F126LOC_RS18085 | Not Available | Positive | 4158402 - 4159886 | 54623.2 |
| kdo(2)-lipid iv(a) palmitoleoyltransferase | F126LOC_RS18090 | Not Available | Negative | 4159953 - 4160876 | 35207.3 |
| duf1176 domain-containing protein | F126LOC_RS18095 | Not Available | Positive | 4161253 - 4162323 | 38805.9 |
| yybh family protein | F126LOC_RS18100 | Not Available | Negative | 4162457 - 4162849 | 14564.4 |
| hypothetical protein | F126LOC_RS18105 | Not Available | Negative | 4162907 - 4164679 | 66698.7 |
| pspa/im30 family protein | F126LOC_RS18110 | Not Available | Negative | 4164748 - 4165437 | 25734.4 |
| hypothetical protein | F126LOC_RS18115 | Not Available | Negative | 4166162 - 4167307 | 41286.8 |
| duf6971 family protein | F126LOC_RS18120 | Not Available | Negative | 4167409 - 4167819 | 15309.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
