Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii and iii secretion system protein family protein | F126LOC_RS18025 | Not Available | Negative | 4145571 - 4147010 | 50205.2 |
| flp pilus assembly protein cpab | F126LOC_RS18030 | Not Available | Negative | 4147093 - 4148043 | 33428.1 |
| prepilin peptidase | F126LOC_RS18035 | Not Available | Negative | 4148090 - 4148641 | 19575.9 |
| flp family type ivb pilin | F126LOC_RS18040 | Not Available | Negative | 4148649 - 4148870 | 7397.95 |
| sensor histidine kinase | F126LOC_RS18045 | Not Available | Negative | 4149185 - 4150684 | 56538.8 |
| response regulator transcription factor | F126LOC_RS18050 | Not Available | Negative | 4150662 - 4151372 | 27018.2 |
| na+/h+ antiporter | F126LOC_RS18055 | Not Available | Negative | 4151729 - 4153375 | 60426.8 |
| ncs2 family permease | F126LOC_RS18060 | Not Available | Negative | 4153642 - 4154997 | 46269.3 |
| hypothetical protein | F126LOC_RS18065 | Not Available | Positive | 4155212 - 4155628 | 15940.8 |
| allantoinase puue | F126LOC_RS18070 | Not Available | Negative | 4155820 - 4156779 | 36766.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
