Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deaminated glutathione amidase | F126LOC_RS17875 | Not Available | Positive | 4098135 - 4098932 | 28961.1 |
| l,d-transpeptidase family protein | F126LOC_RS17880 | Not Available | Positive | 4099117 - 4100187 | 38223.6 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein | F126LOC_RS17885 | Not Available | Negative | 4100251 - 4101531 | 45557.3 |
| mannitol dehydrogenase family protein | F126LOC_RS17890 | Not Available | Positive | 4101853 - 4103340 | 54754.8 |
| hypothetical protein | F126LOC_RS17895 | Not Available | Negative | 4103333 - 4103707 | 13427.2 |
| mfs transporter | F126LOC_RS17900 | Not Available | Positive | 4104091 - 4105617 | 56381.3 |
| ai-2e family transporter | F126LOC_RS17905 | Not Available | Negative | 4105711 - 4106721 | 37247.5 |
| fecr domain-containing protein | F126LOC_RS17910 | Not Available | Negative | 4106892 - 4107839 | 35345.8 |
| sigma-70 family rna polymerase sigma factor | F126LOC_RS17915 | Not Available | Negative | 4107836 - 4108360 | 19979.3 |
| tonb-dependent siderophore receptor | F126LOC_RS17920 | Not Available | Negative | 4108524 - 4110917 | 87946.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
