Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS17370 | Not Available | Negative | 4007407 - 4008789 | 50177.1 |
| ribose 5-phosphate isomerase b | F126LOC_RS17375 | Not Available | Positive | 4009333 - 4009791 | 16374.3 |
| transaldolase | F126LOC_RS17380 | Not Available | Positive | 4010006 - 4010956 | 35347.1 |
| transketolase | F126LOC_RS17385 | Not Available | Positive | 4010972 - 4012966 | 71734.7 |
| beta-glucoside-specific pts transporter subunit iiabc | F126LOC_RS17390 | Not Available | Positive | 4013266 - 4015170 | 66823.0 |
| glycoside hydrolase family 1 protein | F126LOC_RS17395 | Not Available | Positive | 4015229 - 4016656 | 53314.1 |
| bglg family transcription antiterminator lict | F126LOC_RS17400 | Not Available | Positive | 4016804 - 4017673 | 33673.5 |
| laci family dna-binding transcriptional regulator | F126LOC_RS17405 | Not Available | Positive | 4017901 - 4018938 | 38954.9 |
| glycosyl hydrolase 53 family protein | F126LOC_RS17410 | Not Available | Negative | 4019134 - 4020657 | 56314.0 |
| abc transporter atp-binding protein | F126LOC_RS17415 | Not Available | Negative | 4020868 - 4021953 | 40149.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
