Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 209235 - 209310 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 209532 - 212438 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 212569 - 212684 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 212737 - 212813 | Not Available |
| Trna-trp | Not Available | Not Available | Positive | 212868 - 212943 | Not Available |
| galactofuranose abc transporter, galactofuranose-binding protein ytfq | F126LOC_RS00950 | Not Available | Positive | 213383 - 214339 | 34091.1 |
| galactofuranose abc transporter, atp-binding protein ytfr | F126LOC_RS00955 | Not Available | Positive | 214530 - 216047 | 55383.3 |
| galactofuranose abc transporter, atp-binding protein ytft | F126LOC_RS00960 | Not Available | Positive | 216037 - 217047 | 34954.5 |
| galactofuranose abc transporter, permease protein yjff | F126LOC_RS00965 | Not Available | Positive | 217047 - 218009 | 34341.3 |
| hth-type transcriptional regulator hdfr | F126LOC_RS00970 | Not Available | Negative | 218031 - 218858 | 31386.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
