Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug/biocide efflux pace transporter | F126LOC_RS17170 | Not Available | Negative | 3957298 - 3957768 | 18105.6 |
| lysr family transcriptional regulator | F126LOC_RS17175 | Not Available | Positive | 3957909 - 3958787 | 32612.2 |
| class i fumarate hydratase fuma | F126LOC_RS17180 | Not Available | Positive | 3959278 - 3960921 | 59857.1 |
| nitric oxide reductase transcriptional regulator norr | F126LOC_RS17185 | Not Available | Negative | 3961247 - 3962797 | 56741.1 |
| anaerobic nitric oxide reductase flavorubredoxin | F126LOC_RS17190 | Not Available | Positive | 3962963 - 3964492 | 57225.6 |
| nadh:flavorubredoxin reductase norw | F126LOC_RS17195 | Not Available | Positive | 3964503 - 3965639 | 41167.1 |
| sam-dependent methyltransferase tehb | F126LOC_RS17200 | Not Available | Positive | 3965758 - 3966618 | 32861.0 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | F126LOC_RS17205 | Not Available | Negative | 3966708 - 3967361 | 23582.1 |
| ubiquinone biosynthesis accessory factor ubik | F126LOC_RS17210 | Not Available | Positive | 3967868 - 3968149 | 10819.1 |
| l-methionine/branched-chain amino acid transporter | F126LOC_RS17215 | Not Available | Negative | 3968258 - 3969511 | 44658.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
