Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | F126LOC_RS17020 | Not Available | Negative | 3922199 - 3923092 | 32713.6 |
| helix-turn-helix transcriptional regulator | F126LOC_RS17025 | Not Available | Positive | 3923727 - 3924416 | 26713.9 |
| cytosine permease | F126LOC_RS17030 | Not Available | Positive | 3924431 - 3925747 | 46628.5 |
| svx/avrxca family virulence/avirulence protein | F126LOC_RS17035 | Not Available | Positive | 3926055 - 3927920 | 68405.4 |
| multidrug efflux mfs transporter | F126LOC_RS17045 | Not Available | Positive | 3928503 - 3929696 | 42899.2 |
| exbd/tolr family protein | F126LOC_RS17050 | Not Available | Positive | 3929986 - 3930390 | 14881.4 |
| energy transducer tonb | F126LOC_RS17055 | Not Available | Positive | 3930392 - 3931138 | 27304.5 |
| tonb-dependent receptor family protein | F126LOC_RS17060 | Not Available | Positive | 3931229 - 3933469 | 82506.5 |
| mota/tolq/exbb proton channel family protein | F126LOC_RS17065 | Not Available | Positive | 3933555 - 3934238 | 24903.7 |
| phospholipase d-like domain-containing protein | F126LOC_RS17070 | Not Available | Positive | 3934231 - 3935577 | 49660.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
