Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | F126LOC_RS16920 | Not Available | Positive | 3901356 - 3901955 | 22148.8 |
| hypothetical protein | F126LOC_RS16925 | Not Available | Positive | 3902222 - 3902794 | 21244.3 |
| hpp family protein | F126LOC_RS16930 | Not Available | Negative | 3903091 - 3903624 | 18533.2 |
| tetr/acrr family transcriptional regulator | F126LOC_RS16935 | Not Available | Positive | 3903757 - 3904323 | 21512.9 |
| voc family protein | F126LOC_RS16940 | Not Available | Positive | 3904409 - 3904810 | 14837.8 |
| copper-binding periplasmic metallochaperone cuep | F126LOC_RS16945 | Not Available | Positive | 3905025 - 3905576 | 19689.5 |
| abc transporter six-transmembrane domain-containing protein | F126LOC_RS16950 | Not Available | Negative | 3905684 - 3906577 | 32591.5 |
| tetr/acrr family transcriptional regulator | F126LOC_RS16955 | Not Available | Positive | 3906670 - 3907242 | 21301.4 |
| fidl | F126LOC_RS16960 | Not Available | Negative | 3907291 - 3907761 | 18119.0 |
| winged helix-turn-helix domain-containing protein | F126LOC_RS16965 | Not Available | Negative | 3907748 - 3908515 | 28779.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
