Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | F126LOC_RS16870 | Not Available | Negative | 3879241 - 3879663 | 16186.9 |
| alpha/beta hydrolase | F126LOC_RS16875 | Not Available | Positive | 3879824 - 3880843 | 36769.9 |
| methyltransferase | F126LOC_RS16880 | Not Available | Negative | 3881541 - 3881738 | 7453.38 |
| hypothetical protein | F126LOC_RS16885 | Not Available | Negative | 3881793 - 3882212 | 15224.0 |
| hypothetical protein | F126LOC_RS16890 | Not Available | Negative | 3882439 - 3882750 | 11455.5 |
| lysm peptidoglycan-binding domain-containing protein | F126LOC_RS16895 | Not Available | Negative | 3882791 - 3894514 | 418320.0 |
| hypothetical protein | F126LOC_RS16900 | Not Available | Negative | 3894507 - 3898256 | 132437.0 |
| hypothetical protein | F126LOC_RS16905 | Not Available | Negative | 3898347 - 3899063 | 25068.9 |
| hypothetical protein | F126LOC_RS16910 | Not Available | Negative | 3899457 - 3900314 | 30562.2 |
| nad(p)h-dependent oxidoreductase | F126LOC_RS16915 | Not Available | Negative | 3900639 - 3901238 | 21711.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
