Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | F126LOC_RS16820 | Not Available | Negative | 3866339 - 3867328 | 36834.8 |
| hypothetical protein | F126LOC_RS16825 | Not Available | Negative | 3867321 - 3868703 | 51170.3 |
| lipopolysaccharide biosynthesis protein | F126LOC_RS16830 | Not Available | Negative | 3868700 - 3869911 | 45833.7 |
| gumc family protein | F126LOC_RS16835 | Not Available | Negative | 3869925 - 3872057 | 79050.3 |
| polysaccharide biosynthesis/export family protein | F126LOC_RS16840 | Not Available | Negative | 3872060 - 3872617 | 20589.0 |
| outer membrane beta-barrel protein | F126LOC_RS16845 | Not Available | Negative | 3872619 - 3873905 | 49755.2 |
| undecaprenyl-phosphate glucose phosphotransferase | F126LOC_RS16850 | Not Available | Negative | 3873895 - 3875244 | 51106.9 |
| hypothetical protein | F126LOC_RS16855 | Not Available | Positive | 3875856 - 3876599 | 27207.1 |
| arac family transcriptional regulator | F126LOC_RS16860 | Not Available | Negative | 3876853 - 3877809 | 34738.1 |
| mfs transporter | F126LOC_RS16865 | Not Available | Positive | 3877925 - 3879112 | 41044.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
