Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | F126LOC_RS00875 | Not Available | Positive | 197768 - 198664 | 33545.0 |
| dna-binding transcriptional regulator oxyr | F126LOC_RS00880 | Not Available | Positive | 199300 - 200208 | 34208.8 |
| si-specific nad(p)(+) transhydrogenase | F126LOC_RS00885 | Not Available | Negative | 200200 - 201606 | 51574.4 |
| hth-type transcriptional repressor fabr | F126LOC_RS00890 | Not Available | Positive | 201818 - 202447 | 23764.5 |
| yijd family membrane protein | F126LOC_RS00895 | Not Available | Positive | 202482 - 202868 | 14070.5 |
| trna (uridine(54)-c5)-methyltransferase trma | F126LOC_RS00900 | Not Available | Negative | 202910 - 204013 | 42123.4 |
| tonb-dependent vitamin b12 receptor btub | F126LOC_RS00905 | Not Available | Positive | 204441 - 206318 | 69044.9 |
| glutamate racemase | F126LOC_RS00910 | Not Available | Positive | 206263 - 207120 | 31279.1 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 207501 - 209042 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 209116 - 209192 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
