Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system f family protein | F126LOC_RS16670 | Not Available | Negative | 3836277 - 3837365 | 41165.1 |
| gspe/pule family protein | F126LOC_RS16675 | Not Available | Negative | 3837358 - 3838914 | 57229.9 |
| type iv pilus biogenesis protein pilp | F126LOC_RS16680 | Not Available | Negative | 3838919 - 3839422 | 17543.1 |
| type 4b pilus protein pilo2 | F126LOC_RS16685 | Not Available | Negative | 3839409 - 3840689 | 47477.7 |
| piln family type ivb pilus formation outer membrane protein | F126LOC_RS16690 | Not Available | Negative | 3840693 - 3842414 | 61088.4 |
| type iv pilus biogenesis protein pilm | F126LOC_RS16695 | Not Available | Negative | 3842424 - 3842861 | 15777.0 |
| tcpq domain-containing protein | F126LOC_RS16700 | Not Available | Negative | 3842861 - 3844162 | 45925.6 |
| duf29 domain-containing protein | F126LOC_RS16705 | Not Available | Negative | 3844311 - 3844748 | 16845.7 |
| hypothetical protein | F126LOC_RS16710 | Not Available | Negative | 3844820 - 3845404 | 22096.7 |
| single-stranded dna-binding protein | F126LOC_RS16715 | Not Available | Negative | 3845505 - 3846053 | 19499.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
