Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03747 family integrating conjugative element membrane protein | F126LOC_RS16570 | Not Available | Negative | 3820968 - 3821723 | 28483.9 |
| type iv conjugative transfer system coupling protein trad | F126LOC_RS16575 | Not Available | Negative | 3821725 - 3823800 | 76784.4 |
| restriction endonuclease | F126LOC_RS16580 | Not Available | Negative | 3823800 - 3824405 | 22604.0 |
| integrating conjugative element protein | F126LOC_RS16585 | Not Available | Negative | 3824405 - 3824923 | 18525.4 |
| transglycosylase slt domain-containing protein | F126LOC_RS16590 | Not Available | Negative | 3824924 - 3825508 | 22283.6 |
| tigr03759 family integrating conjugative element protein | F126LOC_RS16595 | Not Available | Negative | 3825508 - 3826221 | 26457.5 |
| hypothetical protein | F126LOC_RS16600 | Not Available | Negative | 3826231 - 3827112 | 32740.7 |
| hypothetical protein | F126LOC_RS16605 | Not Available | Negative | 3827215 - 3827589 | 13738.2 |
| duf2786 domain-containing protein | F126LOC_RS16610 | Not Available | Negative | 3827636 - 3828334 | 26399.2 |
| hypothetical protein | F126LOC_RS16615 | Not Available | Negative | 3828438 - 3828884 | 16718.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
