Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS16520 | Not Available | Negative | 3815071 - 3815514 | 16810.1 |
| tigr03752 family integrating conjugative element protein | F126LOC_RS16525 | Not Available | Negative | 3815524 - 3817065 | 53923.7 |
| tigr03749 family integrating conjugative element protein | F126LOC_RS16530 | Not Available | Negative | 3817055 - 3817921 | 31121.2 |
| pfl_4703 family integrating conjugative element protein | F126LOC_RS16535 | Not Available | Negative | 3817978 - 3818637 | 25212.4 |
| tigr03750 family conjugal transfer protein | F126LOC_RS16540 | Not Available | Negative | 3818634 - 3818996 | 13287.6 |
| tigr03745 family integrating conjugative element membrane protein | F126LOC_RS16545 | Not Available | Negative | 3819006 - 3819347 | 12030.3 |
| tigr03758 family integrating conjugative element protein | F126LOC_RS16550 | Not Available | Negative | 3819374 - 3819613 | 8653.66 |
| raqprd family integrative conjugative element protein | F126LOC_RS16555 | Not Available | Negative | 3819615 - 3819935 | 11621.6 |
| hypothetical protein | F126LOC_RS16560 | Not Available | Positive | 3820070 - 3820609 | 20534.2 |
| hypothetical protein | F126LOC_RS16565 | Not Available | Negative | 3820751 - 3820945 | 7292.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
