Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(46)-n7)-methyltransferase trmb | F126LOC_RS16225 | Not Available | Negative | 3743820 - 3744539 | 27209.0 |
| a/g-specific adenine glycosylase | F126LOC_RS16230 | Not Available | Positive | 3744705 - 3745811 | 41841.1 |
| oxidative damage protection protein | F126LOC_RS16235 | Not Available | Positive | 3745808 - 3746080 | 10688.8 |
| membrane-bound lytic murein transglycosylase mltc | F126LOC_RS16240 | Not Available | Positive | 3746133 - 3747206 | 39904.5 |
| helix-turn-helix domain-containing protein | F126LOC_RS16245 | Not Available | Positive | 3747302 - 3748393 | 40447.6 |
| alpha/beta hydrolase family protein | F126LOC_RS16250 | Not Available | Negative | 3748356 - 3749399 | 37519.8 |
| phosphoenolpyruvate hydrolase family protein | F126LOC_RS16255 | Not Available | Negative | 3749615 - 3750448 | 29698.9 |
| tm-1-like atp-binding domain-containing protein | F126LOC_RS16260 | Not Available | Negative | 3750462 - 3751685 | 43450.0 |
| tetr/acrr family transcriptional regulator | F126LOC_RS16265 | Not Available | Positive | 3751974 - 3752603 | 23537.2 |
| sdr family oxidoreductase | F126LOC_RS16270 | Not Available | Positive | 3752683 - 3753423 | 26466.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
