Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate c-p lyase system protein phnl | F126LOC_RS16175 | Not Available | Negative | 3733841 - 3734554 | 26512.8 |
| phosphonate c-p lyase system protein phnk | F126LOC_RS16180 | Not Available | Negative | 3734618 - 3735382 | 28345.4 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p-lyase phnj | F126LOC_RS16185 | Not Available | Negative | 3735369 - 3736223 | 32572.8 |
| carbon-phosphorus lyase complex subunit phni | F126LOC_RS16190 | Not Available | Negative | 3736216 - 3737292 | 40075.6 |
| phosphonate c-p lyase system protein phnh | F126LOC_RS16195 | Not Available | Negative | 3737292 - 3737867 | 20544.7 |
| phosphonate c-p lyase system protein phng | F126LOC_RS16200 | Not Available | Negative | 3737867 - 3738313 | 16619.1 |
| phosphonate metabolism transcriptional regulator phnf | F126LOC_RS16205 | Not Available | Negative | 3738314 - 3739027 | 26951.5 |
| autotransporter domain-containing protein | F126LOC_RS16210 | Not Available | Negative | 3739281 - 3742316 | 107221.0 |
| duf2884 domain-containing protein | F126LOC_RS16215 | Not Available | Negative | 3742646 - 3743359 | 26500.8 |
| yggl family protein | F126LOC_RS16220 | Not Available | Negative | 3743474 - 3743818 | 13433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
