Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease v subunit gamma | F126LOC_RS16075 | Not Available | Negative | 3712820 - 3716215 | 130113.0 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | F126LOC_RS16080 | Not Available | Negative | 3716273 - 3716668 | 14959.8 |
| ygdb family protein | F126LOC_RS16085 | Not Available | Negative | 3716655 - 3717110 | 16471.7 |
| prepilin peptidase-dependent protein | F126LOC_RS16090 | Not Available | Negative | 3717107 - 3717733 | 23552.3 |
| prepilin peptidase-dependent protein | F126LOC_RS16095 | Not Available | Negative | 3717727 - 3718230 | 18766.9 |
| pin domain-containing protein | F126LOC_RS16100 | Not Available | Negative | 3718410 - 3718913 | 18783.7 |
| helix-turn-helix domain-containing protein | F126LOC_RS16105 | Not Available | Negative | 3718985 - 3719446 | 17278.8 |
| thymidylate synthase | F126LOC_RS16110 | Not Available | Negative | 3719669 - 3720463 | 30345.2 |
| prolipoprotein diacylglyceryl transferase | F126LOC_RS16115 | Not Available | Negative | 3720500 - 3721366 | 32584.5 |
| phosphoenolpyruvate--protein phosphotransferase | F126LOC_RS16120 | Not Available | Negative | 3721593 - 3723839 | 83520.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
