Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | F126LOC_RS15975 | Not Available | Negative | 3684741 - 3685559 | 29254.3 |
| molybdopterin-dependent oxidoreductase | F126LOC_RS15980 | Not Available | Negative | 3685628 - 3687886 | 83966.2 |
| abc transporter substrate-binding protein | F126LOC_RS15985 | Not Available | Positive | 3688301 - 3689887 | 58813.0 |
| abc transporter permease | F126LOC_RS15990 | Not Available | Positive | 3689940 - 3690926 | 35877.1 |
| abc transporter permease | F126LOC_RS15995 | Not Available | Positive | 3690928 - 3691863 | 32926.5 |
| abc transporter atp-binding protein | F126LOC_RS16000 | Not Available | Positive | 3691860 - 3693581 | 63372.0 |
| m20 aminoacylase family protein | F126LOC_RS16005 | Not Available | Positive | 3693637 - 3694839 | 43100.4 |
| tetr/acrr family transcriptional regulator | F126LOC_RS16010 | Not Available | Positive | 3694962 - 3695663 | 25825.1 |
| 4-hydroxy-tetrahydrodipicolinate synthase family protein | F126LOC_RS16015 | Not Available | Positive | 3695707 - 3696624 | 33108.5 |
| murein transglycosylase a | F126LOC_RS16020 | Not Available | Negative | 3696712 - 3697842 | 41792.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
