Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secy-interacting protein | F126LOC_RS15925 | Not Available | Negative | 3675427 - 3675975 | 20270.2 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | F126LOC_RS15930 | Not Available | Positive | 3676046 - 3676894 | 32284.9 |
| nucleotide 5'-monophosphate nucleosidase ppnn | F126LOC_RS15935 | Not Available | Positive | 3677331 - 3678695 | 50473.0 |
| flap endonuclease xni | F126LOC_RS15940 | Not Available | Positive | 3678767 - 3679549 | 28785.4 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | F126LOC_RS15945 | Not Available | Negative | 3679604 - 3680704 | 42059.8 |
| duf423 domain-containing protein | F126LOC_RS15950 | Not Available | Negative | 3680697 - 3681092 | 14529.2 |
| transcriptional regulator gcva | F126LOC_RS15955 | Not Available | Negative | 3681195 - 3682118 | 34590.4 |
| ygdi/ygdr family lipoprotein | F126LOC_RS15960 | Not Available | Negative | 3682656 - 3682877 | 8032.62 |
| cysteine desulfurase csda | F126LOC_RS15965 | Not Available | Positive | 3683061 - 3684266 | 43282.7 |
| cysteine desulfurase sulfur acceptor subunit csde | F126LOC_RS15970 | Not Available | Positive | 3684270 - 3684725 | 16709.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
