Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s2 | F126LOC_RS15875 | Not Available | Negative | 3664143 - 3664868 | 26698.1 |
| type i methionyl aminopeptidase | F126LOC_RS15880 | Not Available | Positive | 3665213 - 3666007 | 29310.4 |
| bifunctional uridylyltransferase/uridylyl-removing protein glnd | F126LOC_RS15885 | Not Available | Positive | 3666170 - 3668764 | 100250.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | F126LOC_RS15890 | Not Available | Positive | 3668793 - 3669620 | 30022.9 |
| duf3461 family protein | F126LOC_RS15895 | Not Available | Positive | 3669899 - 3670288 | 15212.1 |
| flavodoxin | F126LOC_RS15900 | Not Available | Negative | 3670361 - 3670816 | 16492.5 |
| trna pseudouridine(65) synthase truc | F126LOC_RS15905 | Not Available | Negative | 3670884 - 3671669 | 29846.7 |
| yqcc family protein | F126LOC_RS15910 | Not Available | Negative | 3671662 - 3672012 | 13295.7 |
| marr family winged helix-turn-helix transcriptional regulator | F126LOC_RS15915 | Not Available | Negative | 3672104 - 3672550 | 17100.6 |
| amidohydrolase | F126LOC_RS15920 | Not Available | Negative | 3672845 - 3674521 | 60778.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
