Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hslu--hslv peptidase atpase subunit | F126LOC_RS00775 | Not Available | Negative | 176593 - 177924 | 49611.6 |
| atp-dependent protease subunit hslv | F126LOC_RS00780 | Not Available | Negative | 177934 - 178464 | 18985.8 |
| cell division protein ftsn | F126LOC_RS00785 | Not Available | Negative | 178548 - 179408 | 31171.1 |
| dna-binding transcriptional regulator cytr | F126LOC_RS00790 | Not Available | Negative | 179497 - 180540 | 38611.5 |
| primosomal protein n' | F126LOC_RS00795 | Not Available | Negative | 180849 - 183047 | 81613.5 |
| 50s ribosomal protein l31 | F126LOC_RS00800 | Not Available | Positive | 183321 - 183536 | 7755.31 |
| type ii toxin-antitoxin system hicb family antitoxin | F126LOC_RS00805 | Not Available | Negative | 183633 - 184043 | 14507.2 |
| type ii toxin-antitoxin system hica family toxin | F126LOC_RS00810 | Not Available | Negative | 184071 - 184250 | 6561.09 |
| feccd family abc transporter permease | F126LOC_RS00815 | Not Available | Negative | 184334 - 185344 | 34954.0 |
| abc transporter substrate-binding protein | F126LOC_RS00820 | Not Available | Negative | 185341 - 186303 | 35390.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
